Conference abstracts

Conference Abstracts for Poster Presentations

31. Wang LJ, Nayak T, Chen Y, Chiu YC. An interactive R Shiny app for systematically integrating genetic and pharmacologic cancer dependency maps. AACR-JCA Joint Conference 2022 (Maui, HI).

30. Nayak T, Wang LJ, Ning M, Huang Y, Chiu YC, Chen Y. An R Shiny app for systematically integrating genetic and pharmacologic cancer dependency maps. International Conference on Intelligent Biology and Medicine (ICIBM) 2022 (Philadelphia, PA).

29. Chiu YC, Huang Y, Chen Y. Predicting and characterizing a cancer dependency map of tumors with deep learning. Conference on Intelligent Systems for Molecular Biology (ISMB) 2022 (Madison, WI).

28. Das D, Wang X, Chiu YC, Bouamar H, Chen Y, Zheng S, Cigarroa FG, Sun LZ. Integration of multi-omics data reveals molecular features of Hispanic hepatocellular carcinoma. American Association for Cancer Research (AACR) Annual Meeting 2022 (New Orleans, LA).

27. Ho TC, Kawano H, LaMere MW, Guo N, Chiu YC, Wang J, Jordan CT, Dokholyan NV, Calvi LM, Singh RK, Becker MW. IL-1 via IRAK1/4 Sustains Acute Myeloid Leukemia Stem Cells Following Treatment and Relapse. American Society of Hematology (ASH) Annual Meeting 2021 (Atlanta, GA and Virtual).

26. Rubannelsonkumar G, Chiu YC, Chen Y. An interactive shiny web application for exploring a deep learning-predicted cancer dependency map of tumors. International Conference on Intelligent Biology and Medicine (ICIBM) 2021 (Virtual).

25. Chiu YC, Zheng S, M Rao, Huang Y, Chen Y. A deep learning model for predicting gene dependencies of cancer by integrated genomic profiles. Conference on Intelligent Systems for Molecular Biology (ISMB) 2019 (Basel, Switzerland).

24. Chiu YC, Zheng S, M Rao, Huang Y, Chen Y. Predicting gene dependencies of cancer from integrated genomic profiles by deep learning. International Conference on Intelligent Biology and Medicine (ICIBM) 2019 (Columbus, OH).

23. Hsiao TH, Lu TJ, Mao CL, Wang LJ, Chiu YC, Ou YC, Shao YHJ. An integrated analysis system of circulation tumor cells sequencing. International Conference on Intelligent Biology and Medicine (ICIBM) 2019 (Columbus, OH).

22. Chiu YC, Zheng S, Huang Y, Chen Y. Predicting gene dependencies of cancer from integrated genomic profiles by deep learning. Symposium of Childhood Cancer: Research Challenges and the Future of Therapy (San Antonio, TX).

21. Chuang MK, Chiu YC, Hou HA, Chou WC, Tang JL, Tien HF. The clinical and biological implications of early clearance of peripheral blood blasts after induction chemotherapy in acute myeloid leukemia. American Society of Hematology (ASH) Annual Meeting 2018 (San Diego, CA).

20. Chiu YC, Chen HIH, Zhang T, Zhang S, Wang LJ, Huang Y, Chen Y. Predicting drug response of tumors from integrated genomic profiles by deep neural networks. San Antonio Postdoctoral Research Forum (SAPRF) 2018 (San Antonio, TX). 2nd Place Poster Presentation

19. Hsiao TH, Chiu YC, Wang LJ, Chen Y, Shao YHJ. Differential network analysis using single-cell RNA-Seq data of circulating prostate tumor cells. Conference on Intelligent Systems for Molecular Biology (ISMB) 2018 (Chicago, IL).

18. Chiu YC, Ho TC, Tsai JR, Wang LJ, Hsu SL, Chen Y, Teng CLJ, Hsiao TH. RNA-­Seq revealed an integration of multiple resistance functions for predicting response to the “7+3” induction chemotherapy of de novo acute myeloid leukemia. American Society of Hematology (ASH) Annual Meeting 2017 (Atlanta, GA).

17. Chiu PJ, Yang YT, Chiu YC, Hou HA, Tang JL, Yao M, Li CC, Huang SY, Ko BS, Hsu SC, Lin CT, Wu SJ, Tsai W, Chen Y, Chou WC, Tien HF. The clinical and biological implications of aberrant alternative splicing in patients with de novo, non-M3 acute myeloid leukemia. American Society of Hematology (ASH) Annual Meeting 2017 (Atlanta, GA).

16. Lin ME, Chou WC, Chiu YC, Tseng MH, Liu MC, Liu CW, Tang JL, Yao M, Li CC, Huang SY, Chen CY, Ko BS, Hsu SC, Hou HA, Wu SJ, Lin CT, Tsai W, Chen Y, Tien HF. The implications of endoplasmic reticulum stress response in the prognosis and pathogenesis of myelodysplastic syndrome. American Society of Hematology (ASH) Annual Meeting 2017 (Atlanta, GA).

15. Tsai CH, Hou HA, Tang JL, Kuo YY, Chiu YC, Lin CC, Lin LI, Yao M, Li CC, Huang SY, Ko BS, Hsu SC, Lin CT, Wu SJ, Chen CY, Tsai W, Chou WC, Tien HF. Prognostic impacts and dynamic changes of cohesin complex gene mutations in de novo acute myeloid leukemia. American Society of Hematology (ASH) Annual Meeting 2017 (Atlanta, GA).

14. Chiu YC, Wang LJ, Lu TP, Hsiao TH, Chuang EY, Chen Y. Differential correlation analysis of glioblastoma reveals immune ceRNA interactions predictive of patient survival. San Antonio Postdoctoral Research Forum (SAPRF) 2017 (San Antonio, TX).

13. Chang YH, Chiu YC, Chen Y, Hsiao TH, Chuang EY. A bioinformatics framework for integrative analysis of immunogenomics from RNA-Seq and Rep-Seq data. International Conference on Intelligent Biology and Medicine (ICIBM) 2016 (Houston, TX).

12. Yang YT, Chou WC, Chiu YC, Hou HA, Tang JL, Yao M, Li CC, Huang SY, Ko BS, Chen CY, Hsu SC, Lin CT, Wu SJ, Tsay W, Tien HF. Aberrant patterns of alternative splicing are frequent events and harbor prognostic significance in patients with myelodysplastic syndrome. American Society of Hematology (ASH) Annual Meeting 2016 (San Diego, CA).

11. Chang YH, Chiu YC, Lu TP, Lai LC, Tsai MH, Hsiao TH, Chuang EY. Investigation of estrogen receptor-modulated association between immune activities and patient survival in breast cancer. American Association for Cancer Research (AACR) Annual Meeting 2016 (New Orleans, LA).

10. Huang CY, Chiu YC, Lu TP, Lai LC, Tsai MH, Hsiao TH, Chuang EY. An integrated analysis of gene mutations and gene sets for predicting paclitaxel response in lung adenocarcinoma. American Association for Cancer Research (AACR) Annual Meeting 2016 (New Orleans, LA).

9. Jheng YW, Chiu YC, Lu TP, Lai LC, Tsai MH, Hsiao TH, Chuang EY. Characterizing the differences of allelic imbalance between tumor and normal tissues by next-generation sequencing. American Association for Cancer Research (AACR) Annual Meeting 2016 (New Orleans, LA).

8. Wu CT, Cheng CY, Liu WY, Syu JJ, Chiu YC, Hsiao TH, Lai LC, Tsai MH, Lu TP, Chuang EY. Development of a fast algorithm for bacterial strain identification through RNA-seq. International Conference on Intelligent Biology and Medicine (ICIBM) 2015 (Indianapolis, IN).

7. Tien FM, Chou WC, Hou HA, Chiu YC, Chuang EY, Chen CY, Tang JL, Yao M, Huang SY, Ko BS, Hsu SC, Wu SJ, Tsay W, Tien HF. The clinical and biological characterization of de novo acute myeloid leukemia (AML) with GATA2 mutation. American Society of Hematology (ASH) Annual Meeting 2015 (Orlando, FL).

6. Chuang MK, Chiu YC, Chou WC, Hou HA, Chuang EY, Tien HF. A simple, powerful, and widely applicable micro-RNA scoring system in prognostication of de novo myeloid leukemia patients. American Society of Hematology (ASH) Annual Meeting 2014 (San Francisco, CA).

5. Chiu YC, Wu CT, Hsiao TH, Lai YP, Hsiao CK, Chuang EY, Chen Y. Co-modulation analysis of gene regulation in breast cancer reveals complex interplay between ESR1 and ERBB2 genes. Greehey Children’s Cancer Research Institute (GCCRI) Anniversary Symposium 2015 (San Antonio, TX).

4. Tsai MH, Chou WC, Chiu YC, Tien HF, Chuang EY. Investigation of dynamic cross-talk between miRNA and mRNA in acute myeloid leukemia. Human Genome Meeting 2014 (Geneva, Switzerland).

3. Lin CC, Chiu YC, Hou HA, Chou WC, Tien HF. Clinical and prognostic relevance of expression of homeodomain-only protein homeobox (HOPX) in acute myeloid leukemia. American Society of Hematology (ASH) Annual Meeting 2013 (San Francisco, CA).

2. Chiu YC, Hsiao TH, Gu F, Chen Y, Huang TH, Chuang EY. Identification of estrogen receptor modulated gene methylation network in breast cancer. American Association for Cancer Research (AACR) Annual Meeting 2013 (Washington D.C.).

1. Chiu YC, Tsai MH, Lu TP, Hsiao JH, Lai LC, Hou HA, Chou WC, Tien HF, Chuang EY. Identification of combination of mutations for predicting prognostic outcome in patients with acute myeloid leukemia by classification and regression trees (CART) Method. Human Genome Meeting (HGM) 2012 (Sydney, Australia).